{ "_id": "6adca94e9c8ebd685a2a6792", "Package": "banffIT", "Type": "Package", "Title": "Automated Standardized Assignment of the Banff Classification", "Version": "2.0.0", "Authors@R": "c(person(given = \"Guillaume\",\nfamily = \"Fabre\",\nrole = c(\"aut\",\"cre\"),\nemail = \"guijoseph.fabre@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0124-9970\")),\nperson(given = \"Ruth\",\nfamily = \"Sapir-Pichhadze\",\nrole=c(\"fnd\",\"cph\",\"ctb\"),\nemail=\"ruth.sapir-pichhadze@mcgill.ca\"),\nperson(given = \"Jan Ulrich\",\nfamily = \"Becker\",\nrole=c(\"ctb\"),\nemail=\"janbecker@gmx.com\"),\nperson(given = \"Samuel\",\nfamily = \"El Bouzaïdi Tiali\",\nrole=c(\"ctb\"),\nemail=\"sbtiali@maelstrom-research.org\"),\nperson(given = \"Jérôme\",\nfamily = \"Laforme\",\nrole=c(\"ctb\"),\nemail=\"jlaforme@maelstrom-research.org\"),\nperson(given = \"Tina\",\nfamily = \"Wey\",\nrole=c(\"ctb\"),\nemail=\"twey@maelstrom-research.org\"),\nperson(given = \"Edden\",\nfamily = \"Gitelman\",\nrole=c(\"ctb\"),\nemail=\"edden.gitelman@mail.mcgill.ca\"))", "Maintainer": "Guillaume Fabre ", "Description": "Assigns standardized diagnoses using the Banff\nClassification (Category 1 to 6 diagnoses, including Acute and\nChronic active T-cell mediated rejection as well as Active,\nChronic active, and Chronic antibody mediated rejection). The\nmain function considers a minimal dataset containing biopsies\ninformation in a specific format (described by a data\ndictionary), verifies its content and format (based on the data\ndictionary), assigns diagnoses, and creates a summary report.\nThe package is developed on the reference guide to the Banff\nclassification of renal allograft pathology Roufosse C,\nSimmonds N, Clahsen-van Groningen M, et al. A (2018)\n. The full description of the\nBanff classification is available at\n.", "License": "GPL-3", "URL": "https://github.com/PersonalizedTransplantCare/banffIT", "BugReports": "https://github.com/PersonalizedTransplantCare/banffIT/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-US", "RoxygenNote": "7.2.3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-24 12:45:07 UTC", "User": "root" }, "Author": "Guillaume Fabre [aut, cre] (ORCID:\n), Ruth Sapir-Pichhadze\n[fnd, cph, ctb], Jan Ulrich Becker [ctb], Samuel El Bouzaïdi\nTiali [ctb], Jérôme Laforme [ctb], Tina Wey [ctb], Edden\nGitelman [ctb]", "Config/pak/sysreqs": "cmake git make libgit2-dev libicu-dev libuv1-dev\nlibssl-dev libx11-dev zlib1g-dev", "Repository": "https://guifabre.r-universe.dev", "Date/Publication": "2025-07-05 12:40:06 UTC", "RemoteUrl": "https://github.com/cran/banffIT", "RemoteRef": "HEAD", "RemoteSha": "8c464fea7864a23b9c62881c04024377d92e703d", "_user": "guifabre", "_type": "src", 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diagnoses to the input dataset", "topics": [ "add_diagnoses" ] }, { "page": "banff_dataset_evaluate", "title": "Evaluates the format and content of the input dataset", "topics": [ "banff_dataset_evaluate" ] }, { "page": "banff_launcher", "title": "Launch the program", "topics": [ "banff_launcher" ] }, { "page": "banffIT_website", "title": "Call the online documentation", "topics": [ "banffIT_website" ] }, { "page": "calculate_adequacy", "title": "Calculate adequacy of each biopsy from glomeruli and arteries variables", "topics": [ "calculate_adequacy" ] }, { "page": "dataset_cat_as_labels", "title": "Objects exported from other packages", "topics": [ "dataset_cat_as_labels" ] }, { "page": "dataset_summarize", "title": "Objects exported from other packages", "topics": [ "dataset_summarize" ] }, { "page": "get_banff_dictionary", "title": "Get the Banff data dictionary", "topics": [ "get_banff_dictionary" ] }, { "page": "get_banff_example", "title": "Get a dataset example", "topics": [ 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